% This is an example metadata file for a Nortek Aquadopp.
% Reqired NetCDF attributes are noted and must not be removed.
% Users may remove any non-required attributes or add any
% additional attributes they choose, just make sure the descriptor is 
% no more than 50 characters
%
metadata=read_globalattsKJR('/Projects/PalosVerdes/2007/gatts/global_atts851.txt');
%the base file name of the data files
baseFile = '8512aq01';
instnum = '2';

metadata.INSTRUMENT_TYPE = 'Nortek Aquadopp';                                                     % type of instrument and instrument manufacturer
metadata.transducer_offset_from_bottom = 0.80;                                                  % height of transducer heads off the bottom
metadata.DATA_CMNT      ='PV07 B1 Tripod Single Point Current meter';		% any comment
metadata.WATER_DEPTH = 19.68; %this is the correct water depth based on mean pressure data
metadata.WATER_DEPTH_NOTE = 'MSL from Water Level Data';                          % source of water depth information            
%these attributes are part of the EPIC standard and don't change from
%deployment to deployment, so keep them for the next deployment
metadata.DATA_TYPE = ncchar('TIME');
metadata.DATA_SUBTYPE = 'MOORED';
metadata.COORD_SYSTEM = 'GEOGRAPHIC';
metadata.Conventions = 'PMEL/EPIC';
metadata.WATER_MASS = '?';                                                                  % water mass flag used for EPIC contouring programs   
metadata.POS_CONST = 0;                                                                     % consistent position flag (=1 not consistent)       
metadata.DEPTH_CONST = 0;                                                                   % consistent depth flag (=1 not consistent)     
metadata.DRIFTER = 0;                                                                       % drifter flag (=1 if drifter)      
metadata.COMPOSITE = 0;                                                                     % number of pieces in composite series  
                                                                                        %   N.B. - Positive is westerly variation
% Get this from the planning stage
metadata.DiagnosticsInterval = 360;
metadata.DiagnosticsSamples = 60;
%use these attributes if you have external sensors
metadata.AnalogInput1.sensor_type = 'D+A OBS3 Optical Backscatter Sensor';
metadata.AnalogInput1.serial_number = '1224';
metadata.AnalogInput1.sensor_height = 0.6;                                                   %in meters
metadata.AnalogInput1.manufacturer = 'D+A Instruments';
% metadata.AnalogInput1.cals.NTUcoef = [0.95886 366.02362 38.7];                 %[x^0 x^1 x^2] - get from calibration certificate

%use this if you need to correct the time, for instance if the instrument
%was not set in GMT - a positive value adds time, thus moving it forward 
%(e.g., for Hawaii, use 10 hours to correct to GMT).
%Leave empty if not necessary - use hours
% metadata.TimeCorrection = [];
metadata.fixgaps = 1;
metadata.amplitude_cutoff = 55; %if you want to specify your own amplitude cutoff
metadata.metadatafile_name = '8512metadata.m';                                                    % name of metadatafile
metadata.metadatafile_author = 'Kurt Rosenberger, USGS MP';                                     % author of the metadatafile

%now run the scripts
% %now run the scripts
cdfFile = [metadata.MOORING instnum 'aq'];
metadata.filename = cdfFile;
if 1
    aqd2cdf(baseFile,cdfFile,metadata);
end


%convert raw data to netcdf
CDFFile = [cdfFile '-raw'];outFile = cdfFile;
if 1
    aqd2nc(CDFFile,outFile,metadata)
end